You need to run the upgrade-4.6-4.6.1.sql scripts manually or through the APM for acs-kernel, cms and wimpy point maybe (? I forget which packages were necessary to upgrade, sorry, just search for the files, oracle only needs the one for acs-kernel)
You also need to make sure that acs-tcl/tcl/acs-kernel-procs.tcl is recent, checking against "security_context_root" instead of (boo-hiss) hardwired object 0 in the first proc in the file.
If you're using file storage I recommend picking up the 4.6.1 or HEAD version depending on what lineage you're working from.
I've made some minor improvements to other queries here and there in the 4.6.1 branch that won't get migrated to HEAD until we close the release and kick it out the door, that being up to Jeff Davis.
